This is obvious, but it is important to remember.
import pandas as pd, pylab, cProfile
def create_file():
r = pylab.randn(10000,1000)
p = pd.DataFrame(r)
with pd.get_store('test.h5','w') as store:
store['data'] = p
def analyze(p):
return [(p[c] > 0).size for c in [0,1,2,3,4,5,6,7,8,9]]
def copy1():
print 'Working on copy of data'
with pd.get_store('test.h5','r') as store:
p = store['data']
idx = analyze(p)
print idx
def copy2():
print 'Working on copy of data'
with pd.get_store('test.h5','r') as store:
idx = analyze(store['data'])
print idx
def ref():
print 'Working on hdf5 store reference'
with pd.get_store('test.h5','r') as store:
idx = [(store['data'][c] > 0).size for c in [0,1,2,3,4,5,6,7,8,9]]
print idx
#create_file()
cProfile.run('copy1()')
cProfile.run('copy1()')
cProfile.run('copy2()')
cProfile.run('ref()')
When run with python test.py | grep "function calls" gives us
5340 function calls (5256 primitive calls) in 0.094 seconds
2080 function calls (2040 primitive calls) in 0.048 seconds
2080 function calls (2040 primitive calls) in 0.050 seconds
5661 function calls (5621 primitive calls) in 0.402 seconds
So, if you are going to do multiple operations on the data in a node it is better to copy it over once (if you have the memory).
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